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For the 2026 school year, there are 7 public schools serving 3,822 students in San Ysidro, CA (there are , serving 441 private students). 90% of all K-12 students in San Ysidro, CA are educated in public schools (compared to the CA state average of 90%).

The top-ranked public schools in San Ysidro, CA are Vista Del Mar, Sunset Elementary School and San Ysidro Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

San Ysidro, CA public schools have an average math proficiency score of 18% (versus the California public school average of 34%), and reading proficiency score of 28% (versus the 47% statewide average). Schools in San Ysidro have an average ranking of 2/10, which is in the bottom 50% of California public schools.

Minority enrollment is 99% of the student body (majority Hispanic), which is more than the California public school average of 80% (majority Hispanic).